rs221270237 SNP Detail

Summary

• ID
  rs221270237
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161615166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGAATTC TCTAGAAGAT GGAAAATAAC
  TTCCTGTGAG cagtggttct caacatttct aacgctgcat catccttaag gttatggcaa
  cccccaacca taaaatgatt tcatggttac ttcataactg aaactttgct acagttacaa
  M
  cccataatgt aaatatctga gatgccgaat atctggtatg taacccccgt aaaatagtgg
  tttgactccc ctcactaagg ggtcgcaacc cacaggttga gaacaactCT CTTTGAGGGC
  GTGTGCGCCT GATTCTCCAA CTCTAAAGAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081627	CHEV_1_163717728	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221270237					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161615166 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	Intron
Rr421846	regulatory region 421846	751 bp proximal
Tssr14586	transcription start site region 14586	762 bp downstream
Tssr14587	transcription start site region 14587	852 bp downstream
Tssr14588	transcription start site region 14588	867 bp downstream
Tssr14589	transcription start site region 14589	875 bp downstream
Tssr14590	transcription start site region 14590	892 bp downstream
Tssr14591	transcription start site region 14591	903 bp downstream