rs221142626 SNP Detail

Summary

• ID
  rs221142626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117741132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATA GGAATAGGCG GAGCTGAACA
  R
  GGCCCTAGGA ACTAAGACCA TAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280671	CHEV_4_117556540	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221142626					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117741132 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B	391 bp downstream
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	408 bp upstream
Cpgi14670	CpG island 14670	91 bp distal
Gm12841	predicted gene 12841	within coordinates
Rr598245	regulatory region 598245	834 bp distal
Rr598246	regulatory region 598246	911 bp distal
Rr598247	regulatory region 598247	351 bp distal
Rr598248	regulatory region 598248	696 bp distal
Rr598249	regulatory region 598249	within coordinates
Tssr38640	transcription start site region 38640	356 bp downstream
Tssr38641	transcription start site region 38641	325 bp downstream
Tssr43002	transcription start site region 43002	428 bp upstream
Tssr43003	transcription start site region 43003	562 bp downstream