rs221090321 SNP Detail

Summary

• ID
  rs221090321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcaatttct ttacaatctg tacaaccgcc
  tacaacagtt agaacataag cacagatttg tttgggcttg actacttagc aggaactttg
  gcctggggga actgtgaagg aattgctgac atgcaaatca tcactttaaa cctgggaagt
  Y
  tgggaacctc tAATCCAAGT CTTACCTTTT GAGTGTGTTT TAAATTGACT TGGAGACCTT
  ACTGTTTTTT GTTTTTTTCA GAAGATTATC CTCTAACTGA GGGTAATTAG CACTGGATCA
  GTTAACCAGT ATGACTCACT TACACGTTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320083771	CHEV_1_164795530	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221090321					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692968 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	844 bp distal
Rr422027	regulatory region 422027	20 bp distal
Rr422028	regulatory region 422028	1057 bp proximal
Rr422029	regulatory region 422029	1201 bp proximal
Tssr14673	transcription start site region 14673	960 bp downstream
Tssr14674	transcription start site region 14674	1026 bp downstream
Tssr14675	transcription start site region 14675	1041 bp downstream
Tssr14676	transcription start site region 14676	1064 bp downstream
Tssr14677	transcription start site region 14677	1084 bp downstream
Tssr14678	transcription start site region 14678	1103 bp downstream