rs221045951 SNP Detail

Summary

• ID
  rs221045951
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58944569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCATTCC CATCTTTATA
  GATCCCAGTC ATTTATGGTA TGAATGAATG CAAGCAGCAC AGGCTAGGCT GTGTGCAAAA
  GATCATTTAG AGATCAAAAG GAATTTCACT CGATGGTGGT GGCCTGTCAA CAGAGAAGAG
  TCGGAGCTTT TGTTTTTGAT ATGGTTCCTG TGAGGTTCCC CCAACCGCTG GTGGGGTGGG
  K
  GTGGGGGTGG GGGTTAATGA GGGTTGAAAC CACATGCTAG GCAAGTGTTC TATCACTGAG
  CAGTATCCAG CCCTGGTTTT ATTTTGTGTT TATGAGTGTT TTGCCTGCAT GTATATCTGC
  ACTGTGCGAT TGTCAGAAAA GAGAGTGTTG GATTCCCTGA AACTGGAGTT ACAGATGGTT
  GTGGGCTGCT ATATAGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
ss361681271	MGP_WTSI_4_58957441	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	T	T	G	G	G	G	G	G	T	G	T	G	G	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
rs221045951					SNP	G	T	G	T	T	G	G	G	G	G	G	T	G	T	G	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361681271	MGP_WTSI_4_58957441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58944569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	482 bp distal
Rr592951	regulatory region 592951	931 bp distal
Rr592952	regulatory region 592952	within coordinates
Tssr37403	transcription start site region 37403	931 bp downstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	Intron