rs220595929 SNP Detail

Summary

• ID
  rs220595929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155687389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGCAC ACCGAGAGAA
  TTTTAAATAG CAAAAGAAGG CCCATTAAGT GAAGAGATAG GAAGGCTTTT ATATTAAAGT
  GATTCATTTC CAGTGCAGAA GATGGAGAGA CAGAACAACA TGAAGGACCT GTCCACAAGA
  TGGAGATCCT GTGGCTGGTA ATGTGGATGT CCCCAACTGT TTATGTCTTA ATCTGAGCAC
  R
  CCACACCAGT GATCCTGAAA AGATCCATTC TTCAGAAGTG ATAAACACTA TCATAAAGCC
  ACAGGGTGCA ATGTGCTACT TTAGTCAGGA GTGAGTGACT GTCCCTTCCG TACAAATTCT
  TCACTACTGA GTGAAGTGTC ACTGTTAGAA GCAGGATGGG GGGCAGATTG TGAGCCCATG
  CAGGCCCTTT TCTGAGTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442497	CHEV_4_154977041	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220595929					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155687389 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	1076 bp upstream
Cpgi15473	CpG island 15473	595 bp distal
Rr398921	regulatory region 398921	1467 bp downstream
Rr606514	regulatory region 606514	1311 bp distal
Rr606515	regulatory region 606515	1087 bp distal
Rr606516	regulatory region 606516	1243 bp distal
Rr606517	regulatory region 606517	978 bp distal
Rr606518	regulatory region 606518	488 bp distal
Rr606519	regulatory region 606519	within coordinates
Rr606520	regulatory region 606520	902 bp proximal
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40681	transcription start site region 40681	1655 bp downstream
Tssr40682	transcription start site region 40682	1519 bp downstream
Tssr40683	transcription start site region 40683	1489 bp downstream
Tssr40684	transcription start site region 40684	992 bp downstream
Tssr44954	transcription start site region 44954	1640 bp upstream
Tssr44955	transcription start site region 44955	1091 bp upstream