rs220530813 SNP Detail

Summary

• ID
  rs220530813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:62315196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGGGG GGGAGGCAGG
  GTTTCTCTGT GGAGCCCCAG CTGTCCTGGA ATTCACTCTG TAGACCAGGC TGGCCTCGAA
  CTCAGAAATC CGACTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG GGCCACCACT
  GGCCGGAACT TTGGGTAATT TACTTACTCA TTTAGAACAC ATTACCCATT TCCTCTAACA
  R
  AACAACAGTG AAGCACTTTG TGAAAAAAAA GTAGGTGCGG TGTTTACTTG AGAAATGGGG
  CTTAGAAATG GAACCTACAT GGGCCCTTCG GCCTCCTTCA ATGACACATT TTTTTTTATA
  GTGCCTCAAA AATATTTCCC CTAAACCCCA CAAATATCAA TTAAAGATCT CTTCTGTTCA
  CACAATTTTC AAAGCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325649297	CHEV_18_62341779	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220530813					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62315196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm9949	predicted gene 9949			Intron
				Noncoding-Transcript-Variant
Rr393783	regulatory region 393783			within coordinates
Rr539066	regulatory region 539066			1920 bp distal
Rr539067	regulatory region 539067			1300 bp distal
Rr539068	regulatory region 539068			1582 bp proximal
Rr539069	regulatory region 539069			1742 bp proximal
Tssr151487	transcription start site region 151487			1943 bp downstream
Tssr151488	transcription start site region 151488			801 bp upstream