rs220396105 SNP Detail

Summary

• ID
  rs220396105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACCTGC TGCCTTCATC
  TACTTCCCAA TGCTTGAGGC CAGCCTGTAG TCAGATATTT CACCCAGACA TAAAGGAAAA
  GACCATTTTT TTTTTAGGAA ATGTTTTTAA TAAAAGAAAA TTACCAAAAA AGAAAAAAAA
  AACCCAACCC ACAAAAGAAG AAAAAAAGGA AAAAAGTTGC CCCGCCCCTT TGTGTGTTCC
  Y
  CTCTCTGCTC CTTTCTCCCC ACTGCTGACC CGTTTTTTGA GGTGCGCTAG GAGGGAGGCT
  CGCCTCTGAC CGGGTTGGCT TTCTCTTTGG ACATGGGGCT TTGATGTTCT TCCAGAGTTG
  GTCTCTGGTG TTTTCTCACA TCCAGTTTGT AGCCCACTAA GAATACAGGG AAAAGTGTCC
  TCCAGCCTCT TCTAGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786141	MGP_WTSI_3_87719705	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220396105					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786141	MGP_WTSI_3_87719705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823090 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Rr579572	regulatory region 579572	1396 bp proximal
Tssr29850	transcription start site region 29850	838 bp downstream
Tssr29851	transcription start site region 29851	703 bp downstream
Tssr29852	transcription start site region 29852	688 bp downstream
Tssr29853	transcription start site region 29853	600 bp downstream
Tssr29854	transcription start site region 29854	456 bp downstream
Tssr29855	transcription start site region 29855	271 bp downstream
Tssr29856	transcription start site region 29856	235 bp downstream
Tssr29857	transcription start site region 29857	211 bp downstream
Tssr29858	transcription start site region 29858	180 bp downstream
Tssr29859	transcription start site region 29859	148 bp downstream
Tssr29860	transcription start site region 29860	within coordinates
Tssr29861	transcription start site region 29861	6 bp upstream