rs220139393 SNP Detail

Summary

• ID
  rs220139393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101216607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTGTGG TTCCAGAGAG
  ACATGACTGC ATCCTGGTGG GGAGGCATAG CAATAAGCAG ATATGGCAGC AGATGCAGGA
  AGCTGATAGC TCACATCCTT GACAGCAAGC ACCAAGCAGA GAGAGCAAAC TGGATGAGGT
  AGGCGGCTTC TAATCTCAAA GCTTGCCTCC AGTGACATAC TTCCTCCAGC AAGGCTGCCC
  Y
  ACCAGAACCT TCCCAAACAG CACCACCAGC AGGAGATCAG GCGGTTAAAT GTCTGAGAGC
  ATGGAGGACA TTTCTCTTTC AAAGCACCAC AAGTCAGTTC TGAGCTTAGT TCTGATGATC
  CTAACAGTGT AACAGTGTCT ACCTAAGCAA ACTACTTCTC AGTTGTGCTT TTCATTTCTC
  TCTCTCTCTC TCTTTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229519	CHEV_4_101032015	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220139393					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101216607 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Rr596130	regulatory region 596130	1593 bp distal
Rr596131	regulatory region 596131	569 bp distal
Rr596132	regulatory region 596132	within coordinates