rs220059879 SNP Detail

Summary

• ID
  rs220059879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90418001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTGTAGA TGTCTTCAGA CACACTAGAA GAGGGCACCA
  GATCTCGTTA CGGATGGTTG TGAGCCACCA TGTGGTTGCT GGGATTTGAA CTCCGGACCT
  Y
  TGGAAGAGCA GTCAGGTACT CTTACCCACT CAGCCATCTC ACCAGCCCCA CATTTTTTGA
  TGGCTTGTTT ATTTCTGTTT CTGGCTATGT AGTATGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837927	CHEV_3_90314616	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220059879					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90418001 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	1196 bp upstream
Cpgi13465	CpG island 13465	925 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	686 bp upstream
Rr397813	regulatory region 397813	1017 bp downstream
Rr580381	regulatory region 580381	1588 bp distal
Rr580382	regulatory region 580382	1771 bp distal
Rr580383	regulatory region 580383	706 bp distal
S100a1	S100 calcium binding protein A1	340 bp downstream
Tssr30207	transcription start site region 30207	1589 bp downstream
Tssr30208	transcription start site region 30208	1008 bp downstream
Tssr34237	transcription start site region 34237	1963 bp upstream
Tssr34238	transcription start site region 34238	1188 bp upstream
Tssr34239	transcription start site region 34239	1166 bp upstream
Tssr34240	transcription start site region 34240	439 bp downstream
Tssr34241	transcription start site region 34241	1326 bp downstream