rs219758630 SNP Detail

Summary

• ID
  rs219758630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCGGTG GCGGCCGCAG
  AAGCCGCAGC GACCGTCCGC GCCGGCGCCT CCCTCCCTTC CTTCCCTCCC TCCGGGACCG
  CCTCTCCGTC GCCGCCCGGC CTCCTCGGGC CCGAGCGCAC ACCGGGCTGT GGCCGCGCGG
  AGTCGGCAGC CTCGCGCTCT CCTCTGGGGC CTGGGGCACC GCCGCGCCCT GCGAGGCAGC
  S
  GTCTGCCCAC TCGCCCGCCC GCCTGCCCGC CCGCTCGCCA TCTCTCCGCG GCTCCGGCGC
  TACCCGGTCC CCTCCGGCGG CAGCTGCCAT GGGCACCGAC AGCCGCGCGG CCGGGGCGCT
  CCTGGCGCGG GCCAGCACCC TGCACCTGCA GACCGGGAAC CTGCTCAACT GGGGCCGCCT
  GCGAAAAAAG TGCCCGTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359496032	MGP_WTSI_3_121948815	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219758630					SNP	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496032	MGP_WTSI_3_121948815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13765	CpG island 13765			within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit			mRNA-UTR
				Noncoding-Transcript-Variant
Gm46822	predicted gene, 46822			391 bp upstream
Rr375675	regulatory region 375675			1420 bp downstream
Rr397979	regulatory region 397979			397 bp downstream
Rr584264	regulatory region 584264			1628 bp distal
Rr584265	regulatory region 584265			558 bp distal
Rr584266	regulatory region 584266			330 bp distal
Rr584267	regulatory region 584267			403 bp distal
Rr584268	regulatory region 584268			325 bp proximal
Rr584269	regulatory region 584269			1826 bp proximal
Tssr1039	transcription start site region 1039			153 bp downstream
Tssr31478	transcription start site region 31478			347 bp downstream
Tssr31479	transcription start site region 31479			319 bp downstream
Tssr31480	transcription start site region 31480			289 bp downstream
Tssr31481	transcription start site region 31481			275 bp downstream
Tssr31482	transcription start site region 31482			175 bp downstream
Tssr31483	transcription start site region 31483			68 bp downstream
Tssr31484	transcription start site region 31484			13 bp upstream
Tssr35443	transcription start site region 35443			668 bp upstream
Tssr35444	transcription start site region 35444			565 bp upstream