rs219672861 SNP Detail

Summary

• ID
  rs219672861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81930666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCTCTA ACTCCAGCAC
  TAGAGACTCT GAAGTAGAGG AAGTGTTGGA AGCTCCAGAC AACCTGGGCT ACAGGAGGGT
  GAGACCCTCT CAAAGCAGCC ACAGAGCAAG AGCTGAGATT AGGCAAGGGT TGGACAGTGA
  AGGCTGCATG AGGAAGACCT GAATTAGCTC ATAATCCCCA CCCCTGTAAC TTAAGCACTG
  M
  CGGGGAGTCC AGTGCCCTCT TCTGGCCTCT TCAGAAACTT GGACATACAT ACACAAAGAC
  GTGAATTTAT TGAAATCTAT ATTGTATTAC AATCAATAAT TAAATTGTGG AGCTTGCACA
  TGAATAAACA AATGAGTTTC ACAGAGCAGA ACCCAGAAGC TATTTTAATA TTTAAGAATC
  AGTATTCTGG TTTGAAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321840535	CHEV_6_81903679	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219672861					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81930666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Rr632565	regulatory region 632565			9 bp proximal