rs219575200 SNP Detail

Summary

• ID
  rs219575200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtgtgtgtg tgtgtgtgtg tgtAAGCTAA
  TAgatactgg atatcttcct caattactaa ccatcttatt ttttttgaga cagagtctct
  cgatgaacca ggagctaagt gattcagcca gactaaatgg ccaggaagca acaggaatga
  R
  tatatatata tatatatata tatatatata tatatatata tatatgtata tatatatata
  tatatgtgta tTCCtgttga agaatatttg atcacattgt gaaccctgag attgttattt
  actgaaaaaa aaatgtttct agttatgaag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250048	CHEV_4_107361536	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219575200					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546128 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	669 bp upstream
Gm12899	predicted gene 12899	253 bp downstream
Rr376978	regulatory region 376978	120 bp downstream
Rr597042	regulatory region 597042	242 bp distal
Tssr38260	transcription start site region 38260	438 bp downstream