rs219495479 SNP Detail

Summary

• ID
  rs219495479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13253284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCTAAA TAAGTAGCCT
  CTCTCACTGC ATACCCACCT CCACCATGTA TCTTAACATA GCCTGACCCA CAGTGGCCCA
  CAGTGGTCCT CCATACCCTT CCCAGTCCTA AGCTACCTTC TGAAGAAGCC ACTCTAAAGC
  CTGGGGTAGA CAGCACGGGG CAGTGCAAAC TCAGCACAAG GACCCAGGGT CTGAGAGAAA
  Y
  CTAGCTTTAC TTCAGGAGTT AAGCATTTCT GAGGCTGTTC CCTCAGAGTA AAGCAAATGG
  AGACAGACCC AAGAAGAGTG GATGAGGCAT TGCTGTGGAT GAATAAAGAT GGCAACAGCT
  GAACCCACTG ACATGTCTGC AGTACCAACT ACCTAGGTGA CCAGCCAGAC TGCATCAGCT
  CCCTGGTTCC CATCCCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505073	CHEV_8_13203284	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219495479					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13253284 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	1494 bp downstream
Cpgi20110	CpG island 20110	1850 bp distal
Gm56825	predicted gene, 56825	1051 bp upstream
Rr659874	regulatory region 659874	1801 bp distal
Rr659875	regulatory region 659875	1571 bp distal
Rr659876	regulatory region 659876	1062 bp distal
Rr659877	regulatory region 659877	561 bp distal
Rr659878	regulatory region 659878	440 bp proximal
Rr659879	regulatory region 659879	531 bp proximal
Rr659880	regulatory region 659880	685 bp proximal
Tssr80429	transcription start site region 80429	1856 bp upstream