rs219468719 SNP Detail

Summary

• ID
  rs219468719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGGAA CAATACTAAG
  AAAATATGTT TTCTAAGAGT GAGTGTATAA AACAGGTAGA AAAATAGAAG CAAATTACCT
  TAAGTAAAAA TGGTGAGAGG GGGGTGGAGG CAGCATCTAG GTTTAGGTGA GAGACATAAT
  TCTAACTGCA CAAGGCAGAC CAATGTTGAA TTCCGTGATC ACTATTTTAT AAGCAAATGG
  Y
  AATAAAAAGG AGAAAGGGAG GAGGAGGAAG GAGGAGCACG GTACAGTGGC ATGAGGCACC
  ATTCTGCATT GTTAAGGTTC TAAACCCCAA ATTTCCAAAA GGAGGAATTT CAGTGTCACT
  TGCTCCCCAG CCCATGGCGA TAAACCTCCA GAGTGCATGT CACAGCCCCA AGTGACCCTG
  GTTGTGTCAG CAGCTCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765066	CHEV_3_52558270	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219468719					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661769 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	100 bp proximal
Tssr33262	transcription start site region 33262	697 bp downstream