rs219442106 SNP Detail

Summary

• ID
  rs219442106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGATGCC AGGGTGCAGA
  GTCGGCCTTG ATTTTCTCCT TTGAGTCTTT GATTGCAACT CTCTGGTGTC CGTGTTCCTG
  TCGTAGTGTT CCCTCCCCCT CTCGGTTCCC CGTGCGCCGC ACCCCCTCCC CCCACCTGGG
  GCTAAGAAGT TGTTACCATT CTGGGCTCAT TAGACTCTTG AAAGTTGCGA GGGGCGGGGG
  K
  GGGGGGGGTG GGGGGGGGTG GGGGTGGGGG AAGGTTCATA AAACTTTGCT TGTTTAAAAA
  AGTTTTCCTC ATTTCTGAAA GTGGGCAAGA GCGTATTCAC TGGGTTGTCA TTTCAGGAAT
  TTTACAGGAA ACTGGCACCA TTCAAAGAGT CTAAGTTTTA GATAGGAAGT GACTTTAATC
  CCAACATACG GACCTCTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SWR/J	WSB/EiJ
ss362765662	MGP_WTSI_4_107360017	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SWR/J	WSB/EiJ
rs219442106					SNP	T	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362765662	MGP_WTSI_4_107360017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544609 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	716 bp upstream
Rr376978	regulatory region 376978	21 bp upstream
Rr597042	regulatory region 597042	589 bp proximal
Tssr38260	transcription start site region 38260	1077 bp upstream