rs219370527 SNP Detail

Summary

• ID
  rs219370527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCCTCT TCTTCTTTAA
  TGGTGAGAGC CTGCAACGTT GATATGTCCC ACTTTATTAT AGTCTGCTCA CTGTGGAATC
  TTTTTTAAAA ACATATTTTT AAAAATTAAT TAATTAATTT TTAGTACTGT AGCTGTCTTC
  AGACACACCA GAACAGGTTA CTGGATCCCA TAACAAATGG TTGAGAGTCA CCCTGTGGTT
  K
  CTGGGGATTG AACTCAGGAC CTCTGGAAGA GCAGTCAGTA CTCTTAACTG CTGAGCCAGC
  TCTTCAGCCC CAGTGGAATC TTTTTGTAGC ATTAAAAATA AAAGTATTTG GGGCAGGCCA
  GATGGCTCAG CAGGGGAAGG AACTTGATAC CAAGCCTGAG AACCTGAGTT CCATCCTCGA
  GACCCACATA GGAGAGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765049	CHEV_3_52557322	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219370527					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660821 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1048 bp proximal
Tssr33262	transcription start site region 33262	1645 bp downstream