rs219291469 SNP Detail

Summary

• ID
  rs219291469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52205083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGATTC CCCCAAATAT
  TAGGCTCTCC ACCAGAGAGG GGCTGGGAAG CTCCCGGGAT CCACACCCCC TCGCTTGTCG
  GCAGGAAGAA GAAAGTGGTC AGCGCCAGGA ACTGGATGTG GCCTGTCCTG ACTGCCTCAG
  TCCCCTCCCC CTAATATTTT TCCTTTCCCT GCAAATTCCT CCAAGACACA CACACCCCCA
  R
  CACAACCCAA GGTGTTCTAA ATATCCGGTA GTCCTCTGAG GTTCAGGTTT TCATTAAAGC
  AATAACCCAG GAGTATAACT CTGCTCTTAA TTGTAATAGT AAATGGTAGA GTATTCCTGG
  CTGACTTTTT CATTTTTTGT ATTCAGAGAA GATATGTATC ATCACCATCA TCATTAATAT
  CATTAATATT TATTAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308961	MGP_WTSI_6_52178102	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219291469					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308961	MGP_WTSI_6_52178102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52205083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17431	CpG island 17431			1724 bp distal
Cpgi17432	CpG island 17432			881 bp proximal
Gm52902	predicted gene, 52902			1806 bp upstream
Gm57855	predicted gene, 57855			Intron
				Noncoding-Transcript-Variant
Gm68361	predicted gene, 68361			within coordinates
Hoxa9	homeobox A9			Intron
				Noncoding-Transcript-Variant
Mir196b	microRNA 196b			1978 bp downstream
Rr630377	regulatory region 630377			1424 bp distal
Rr630378	regulatory region 630378			902 bp distal
Rr630379	regulatory region 630379			744 bp distal
Rr630380	regulatory region 630380			243 bp distal
Rr630381	regulatory region 630381			1316 bp proximal
Rr630382	regulatory region 630382			1817 bp proximal
Tssr56513	transcription start site region 56513			1792 bp upstream
Tssr56514	transcription start site region 56514			1868 bp upstream
Tssr56515	transcription start site region 56515			1906 bp upstream
Tssr61011	transcription start site region 61011			1941 bp upstream
Tssr61012	transcription start site region 61012			1907 bp upstream
Tssr61013	transcription start site region 61013			1977 bp downstream