rs219271045 SNP Detail

Summary

• ID
  rs219271045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACTGC TGTGGGCTTG
  TCTCTCTCAG AAATCTGTGA GGAAACAGTC CTGGTACTCC CTAGCATTAT CATGTTCTCT
  GTCAGGTTCA TGGGGTGTCT GTAGTTTGTT CCTGTAAAGC AGGGTAGGCC ACTGTTTATC
  TGCCCCGGGA TCTTTACAAT CCAAAACTGA TAGCACAGTT TATACCAGGG TGATGGAGAA
  Y
  ACGTCCAGGA GAACAGGCTT TATAAACACC CAGTCAATAC CGAGCAAAGG ACAGGTGCTG
  TTTGCAAGAC CCTGAAGACT GCACTCTTTA GGCAGAGGGT CAGAACACTA GGCATGCCAT
  GTTCCAGTGA GGGTCCAGTG TCCTGACGGC AGGGCTGGAG CTAAGTCACC AAGCCAAGGA
  TTACACCCAA ATTGGTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765080	CHEV_3_52559349	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219271045					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662848 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	25 bp distal
Tssr33262	transcription start site region 33262	371 bp upstream