rs219136037 SNP Detail

Summary

• ID
  rs219136037
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53370971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCTTCC TGACCTACTT
  ACTCTTCGCT CCTTTAAACT CACTTTCAAG AAGCAAAACA GAGCACCGAG AAACTGAAGA
  GTTAGGGGAT CGTGACACTA AAACAATGAC TACCACGCTC CGAAAAGGAC TTTAGTCACG
  TCTGCTCCAC AAGCATTCAG GCTTCTGCCG TGGACGCCTA TATTCCCACA CTAGGACCCC
  S
  CCCCCCCCCC CCGACGCCCC AAACTAATCA TTTGTGCAAA AGCGACTTAA GGTGGCGGTG
  CACCATTGCG TCTTGTGGGC GCGACACGCT CTATCAAAGG TCCCCTGGAG CTGGTGGGGC
  ATTTAGGGGA GCACCCGCTG GGCGCCTGGC CGTATGAGCG CTGAGGTGCT CGAGAGCCTC
  CCTTCGCAAG GCTCTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
ss357982241	MGP_WTSI_3_53267472	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
rs219136037					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357982241	MGP_WTSI_3_53267472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53370971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	292 bp upstream
Proser1	proline and serine rich 1	245 bp upstream
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	741 bp distal
Rr576697	regulatory region 576697	within coordinates
Rr576698	regulatory region 576698	41 bp proximal
Rr576699	regulatory region 576699	127 bp proximal
Tssr29113	transcription start site region 29113	24 bp upstream
Tssr29114	transcription start site region 29114	116 bp upstream
Tssr29115	transcription start site region 29115	144 bp upstream
Tssr29116	transcription start site region 29116	229 bp upstream
Tssr29117	transcription start site region 29117	345 bp upstream
Tssr33269	transcription start site region 33269	318 bp upstream
Tssr33270	transcription start site region 33270	244 bp upstream