rs218981759 SNP Detail

Summary

• ID
  rs218981759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89257331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGGAGGG CCGAGGGCTG
  CCCGCGCCCA GGAGTCCCAG AGCCCAGAGC AGCGCCAGCC GCATGGCCGC GGAGCTCCGG
  GCTGGACTGG GGCAGCAGGT GCGGGGCTAC GCGTGGAGGA GCAGCCACGG CCCCGCCGGA
  CACCAGCTCG GTGCAGCGCA GCAACTAGGC CCCGCCCCGC CCCGTCTGAG GCTCCGCCCC
  R
  CCCCGTCTGA GGCTCCGCCC CTGCCGCTCA GCGCAGCCTC TTTCCGGCAG CTACCGGGAT
  GGGTTTGGAC ACCACAAGAC TCGCGCCTTC CCTCCATCCT GCCTCCCGTC TGTAGCCCGG
  CTTCGTGGAG ATTGTGCGGG CCAGTTCTTC CGGCTCACCC AATCCCGGAT GCCTGCGAAG
  CACCAGCCGC AGGAGCGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811001	MGP_WTSI_3_89153946	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218981759					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811001	MGP_WTSI_3_89153946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89257331 () rs orientation: forward

Symbol	Name	Function Class
Adam15	ADAM metallopeptidase domain 15	Noncoding-Transcript-Variant
Cpgi13424	CpG island 13424	within coordinates
Dcst1	DC-STAMP domain containing 1	195 bp downstream
Gm66683	predicted gene, 66683	32 bp upstream
Rr397787	regulatory region 397787	within coordinates
Rr580053	regulatory region 580053	1671 bp distal
Rr580054	regulatory region 580054	76 bp distal
Rr580055	regulatory region 580055	within coordinates
Tssr34120	transcription start site region 34120	65 bp upstream
Tssr34121	transcription start site region 34121	23 bp upstream