rs218900179 SNP Detail

Summary

• ID
  rs218900179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:68128701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTAATC TTTATTTTTT
  CAAGGTTATT GAAAAGATTG CATGGTTCTG TGTGACTATC TAGTGGTGCA TTTTCTTTAG
  ATCCTGTAGG TCTCTATTCA CACAGATTCA AGTTTCACAA TGGAATTCAT CTGCCACTAA
  TATTGGCAGT GAGGTCTGAG TTAATTTTCT ACAAACATGA AATGAAGTTT GTCAAGTGAC
  Y
  TTTGAGTGTG GGATTTTTAA CTCTCTAGGT ACTTTTTAAA ATAACTCTAT CAACCAGGAG
  ATTTGCATAT TGCTCCCTAG GGACAACCTC TTCTTGCAAG TGCAGGGTAA AAGCTCACTC
  CTCTTTCTGT CTTGATTACT TTTGACTCTC CATATCAAGT TCGCAGAATG AGGTTCTCTG
  CTCAGCTTCT GGGGCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss368662073	MGP_WTSI_6_68101711	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs218900179					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368662073	MGP_WTSI_6_68101711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:68128701 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv2-116	immunoglobulin kappa variable 2-116	168 bp upstream
Tssr56917	transcription start site region 56917	137 bp upstream