rs218761730 SNP Detail

Summary

• ID
  rs218761730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74518413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTGCG GGGGCCCCTT
  GGCCTTGGGT GGCAGCCGCC GGGCGGACCA CTGCTGCTGC GCGGTCCACA GTGTCATTCC
  TCCCAGCCGC GCTCGCTCAA TGTGGTCCTG ATACGGGGCA GGGGATGAGA TCAGGGACTT
  CAGGGGCTGA AAACCTCCCC ATCTTGGGGC CGGCTAGAAT GCATGGGGCT CTTGATAGAG
  R
  CTACCGATAC TGAGGCGCCA AATTCCTCAG ATTCTGAAGT AGAGAGAAAA TGCGCCAAGT
  AGGAAGGAGT CTTTTGTGTC TGTGTAGAGA GGCTCGGCCC TTCTCCATCT CTTAAGCTTA
  TCTCTGTAGA TCCTTCCGTA GTAGTCTCCC AATTTGCTTT TCAAAAGTCT TTTCCAATTG
  CTGCCACAGT GCTCAGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484874	MGP_WTSI_2_74526126	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218761730					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484874	MGP_WTSI_2_74526126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74518413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11795	CpG island 11795	22 bp distal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd11	homeobox D11	1053 bp downstream
Igs15	intergenic site 15	within coordinates
Rr44604	regulatory region 44604	1213 bp distal
Rr373365	regulatory region 373365	1553 bp upstream
Rr559347	regulatory region 559347	135 bp distal
Rr559348	regulatory region 559348	1572 bp distal
Rr559349	regulatory region 559349	within coordinates
Rr559350	regulatory region 559350	841 bp proximal
Tssr18405	transcription start site region 18405	1512 bp downstream