rs218285454 SNP Detail

Summary

• ID
  rs218285454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:105916990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTATCA CGGAAGCTGA
  TTTAGGGTTC AATTCAGTCT TATCCTAAAT GATAAAGCCG CAGAGTTTGT GAGATAAAGG
  CGATTCTATA CACTCTGTAG ATGTCCCAAC ACTCTCAACG AGGGTTAGTG TGGCTTTTAA
  TTTTCTCACG CTCCTACTTT GGTTATGTGG TATAAGTTCT TTATTTAAAA CTGTCGGAAA
  W
  TTTAAAAAGC AAACACACAA AGAAACTACT ATTATGGACC CTCAAATAAT AATAATAATA
  ATAATAATAA TAATAATAAT AATAATCCTG TTTCCCCCGC CCCTGGGCAC AAGATTTATA
  TTTATTTACA ATCATGGACT GACAAACAGC ATGCCAAGAA CTCTTGACCG GCAGTCAGGC
  TCCAGCACAA ATGAGACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350831918	MGP_WTSI_1_107885837	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218285454					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350831918	MGP_WTSI_1_107885837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105916990 () rs orientation: forward

Symbol	Name	Function Class
Gm7160	predicted gene 7160	within coordinates
Rr396204	regulatory region 396204	862 bp upstream
Rr416453	regulatory region 416453	133 bp proximal
Rr416454	regulatory region 416454	962 bp proximal
Tssr172	transcription start site region 172	1461 bp upstream
Tssr173	transcription start site region 173	1557 bp upstream
Tssr8278	transcription start site region 8278	882 bp downstream
Tssr8279	transcription start site region 8279	525 bp upstream
Tssr8280	transcription start site region 8280	928 bp upstream
Tssr8281	transcription start site region 8281	1124 bp upstream
Tssr8282	transcription start site region 8282	1392 bp upstream
Tssr8283	transcription start site region 8283	1492 bp upstream
Tssr8284	transcription start site region 8284	1516 bp upstream
Tssr8285	transcription start site region 8285	1713 bp upstream
Tssr13137	transcription start site region 13137	419 bp upstream
Tssr13138	transcription start site region 13138	804 bp downstream
Tssr13139	transcription start site region 13139	833 bp downstream
Tssr13140	transcription start site region 13140	965 bp downstream
Tssr13141	transcription start site region 13141	983 bp downstream
Tssr13142	transcription start site region 13142	1017 bp downstream
Zcchc2	zinc finger, CCHC domain containing 2	mRNA-UTR