rs217992676 SNP Detail

Summary

• ID
  rs217992676
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACGGGA CCGAGAATAA
  TTCACTAATT CATAGTCCCG AGGTGGCAGG CAACTATTGT TAATTGTTCC TGCTCCCTTC
  CTGGTGTGTC CTGTGTCACA TACATTCAGA CCTTGGCATC TGAGTAGTTG GAAGAGGCGA
  CTTCTCAGAA GTTGCTCTGC CTGGGCACCA AAAAAAAAAA AAGAAAAAAA GAAAAAAAAA
  M
  ACCTCCTGGA GGAAACATTC GGTGGGGTGA GGGAGCAGCA TGGCCAGGGG TTCCCGACAC
  AGGGCCTTGT GTGTTGAAAG CAGGGATGCT TCTTATTCCG TTTCTCTAAA ATCATCATTC
  CGTGTGCCAC TGTAATAGTG TGGGACATGG TGTGTGTACA CATGTGTCCA TAAGGAGACT
  GCGCACACGC ACAAGCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320504477	CHEV_2_129070127	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217992676					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086311 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1985 bp upstream
Rr373844	regulatory region 373844	1338 bp downstream
Rr373845	regulatory region 373845	1551 bp upstream
Rr564888	regulatory region 564888	1540 bp distal
Rr564889	regulatory region 564889	795 bp distal
Rr564890	regulatory region 564890	175 bp distal
Rr564891	regulatory region 564891	247 bp proximal
Rr564892	regulatory region 564892	262 bp proximal
Rr564893	regulatory region 564893	1118 bp proximal
Tssr20109	transcription start site region 20109	1966 bp upstream