rs217955242 SNP Detail

Summary

• ID
  rs217955242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85353556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGAGAG AGCTAATTCC
  AGCAAGTTGT TCTCAGACCT CCACAAGTAC ACCGTAGCAC ACTCTCTCAC ACCAAATATA
  ATAATAAAAC TTTAAAAACA TCGGAAGGGG AGAAGAAAGA GAATTCAAAA GTCCTCCCTT
  CCTAGATCCT GGGGTATATC TTTTACTTTA TTCTGTCTGT CTTTCTGTCT GTCTGTCTCT
  K
  CGGGGGGCAG AAGGTGTCAG AGAACAATCC TTGGGCCTCA GTTCTCACTG GATCACCTGA
  GGTCATTAGG CTCTGTGGCA GCTACCTGCT CTACCTACTG AGCTTTCCTA TCTGATTATA
  CTTACTTTAA ATTTTCTATT TGAGACGGGG TCTAACCGTG TAACACTGGC TGGCCTCAAA
  CTCACAAGAA GCATCGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369067305	MGP_WTSI_6_85326568	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217955242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369067305	MGP_WTSI_6_85326568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85353556 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Cpgi17642	CpG island 17642	1368 bp distal
Rab11fip5	RAB11 family interacting protein 5 (class I)	1940 bp upstream
Rr633193	regulatory region 633193	1745 bp distal
Rr633194	regulatory region 633194	982 bp distal
Rr633195	regulatory region 633195	1056 bp distal
Rr633196	regulatory region 633196	445 bp proximal
Tssr61748	transcription start site region 61748	1995 bp upstream
Tssr61749	transcription start site region 61749	1982 bp upstream
Tssr61750	transcription start site region 61750	1910 bp upstream
Tssr61751	transcription start site region 61751	1870 bp upstream