rs217583971 SNP Detail

Summary

• ID
  rs217583971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67657896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAGAGGT AGGTCATTTG
  CATGGCATGC ATAAGTTCCT AAGATCCTAA GATATGATCA TCTCTGATAG AAGAAAACAA
  GAATGATGAC TTGACTTACT TCAGCTGTGT GTGATGAGGT GTTAAAAGAA ATGTTCAGGA
  CTCAGTGAGT TGCAGCAATG TTGTACACTG GAGAAAGAGC TCAGCTAGGA TCCATGCCTG
  Y
  CACAAAAGCC ACCCTAAGAG TATGTCCACT CTTGCTTGCA GGGGAGTTGA GAGAAAGCAA
  GGAGAGGACG AGAAAGAAGA TTTATCAATC CCCAAAGTTG ATAAGTTGTG CCTCAAGAGA
  CAGGCAAACT CAAGACTTTC CAAAAATCTA GCTTCCAGGA AATTAATAAA TATCCTCAAT
  TAATTTCAGG ACGACAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss368653901	MGP_WTSI_6_67630906	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs217583971					SNP	T	T	T	T	T	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368653901	MGP_WTSI_6_67630906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67657896 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Rr379537	regulatory region 379537	1007 bp upstream
Rr631677	regulatory region 631677	551 bp proximal