rs217561886 SNP Detail

Summary

• ID
  rs217561886
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189494937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCCTT TTGCCTGGGC
  TTTTTGAGGC AGTCTCTCAC TAGCCTCGAA CTCAGTGAGT AGGCTGACTG CTCAGTGAGC
  TCCAAGGATT CATCTGTTTT CTGTGTCCCC AGCACTGAGA TGACAGGCTC GTGCTACAGC
  ACCCGATTCA TGAGGGCTCT GGGGATCAAG TGAAGGTCCT TATCCTTGGA TGGCAGGTAC
  W
  GTAACAACGG GGCTGTCTCC CTCAGCTCCT GGTTTTATGG TTTTTAAAGA CAGAGTCTTA
  GCTTCTAGCT GAGCTGGCAC TCATTATGTA GCCCAGGCTG GACTCATACT CAACAGCAAT
  CTTTTCTATC TCAGCCTCTT AGATGCTAGA ATAACAGGCA AGATCCACCC CTCCCAGCTT
  CTTCCCAGTT TTGAGAACGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320191519	CHEV_1_191586619	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217561886					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189494937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptpn14	protein tyrosine phosphatase, non-receptor type 14			Intron
				Splice-Site
Rr372632	regulatory region 372632			362 bp downstream
Rr425841	regulatory region 425841			450 bp distal
Rr425842	regulatory region 425842			1539 bp proximal