rs217381996 SNP Detail

Summary

• ID
  rs217381996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41522735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCGGAGC TACACAAAGA
  GTTCTAAGCC AGTGTGGAAT ATAGAGAAAT TTAGGCCATT ATGGATTGCA GATTAAGATC
  CTGTCCACCC CACCCCCTAA AAATCCAAAG AAAGAAAAGA AAACTATAGA GACTCCTACC
  AAAAAGAATC AGAATTCCAG CATGATGGCC GAAGAGTTTG AAGCCAAGCA CTAAGCTTGT
  R
  ATCTTGTATA AGGTCTGTGC AGGTTCTTTT ACCGTTGTTT CAAGACCAGA AGTAAAGCGA
  TATCCACAGA AATAGGAGAA AGGATCAAAA TAAAGTTTCT CCATTATCCA GAAGGCCGTG
  GGTTGCTAAC ACAAAATATA TCTATCTCTT TATCTTCAGC AAATCACTTG GAAGCAAAGA
  ACAGAGAGAA AGTCACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070470	MGP_WTSI_6_41495800	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217381996					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070470	MGP_WTSI_6_41495800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41522735 () rs orientation: forward

Symbol	Name	Function Class
Gm68244	predicted gene, 68244	1511 bp upstream
Gm68268	predicted gene, 68268	298 bp upstream
Rr629250	regulatory region 629250	1757 bp distal
Rr629251	regulatory region 629251	1021 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	929 bp upstream
Trbj2-7	T cell receptor beta joining 2-7	1945 bp downstream
Tssr1821	transcription start site region 1821	911 bp downstream
Tssr1822	transcription start site region 1822	1719 bp upstream
Tssr55943	transcription start site region 55943	1974 bp downstream
Tssr55944	transcription start site region 55944	1772 bp downstream
Tssr55945	transcription start site region 55945	1281 bp downstream
Tssr55946	transcription start site region 55946	968 bp downstream
Tssr55947	transcription start site region 55947	784 bp downstream
Tssr55948	transcription start site region 55948	276 bp upstream
Tssr55949	transcription start site region 55949	462 bp upstream
Tssr55950	transcription start site region 55950	769 bp upstream
Tssr55951	transcription start site region 55951	1496 bp upstream
Tssr55952	transcription start site region 55952	1543 bp upstream
Tssr55953	transcription start site region 55953	1579 bp upstream
Tssr55954	transcription start site region 55954	1627 bp upstream
Tssr55955	transcription start site region 55955	1652 bp upstream
Tssr55956	transcription start site region 55956	1693 bp upstream
Tssr55957	transcription start site region 55957	1981 bp upstream
Tssr60576	transcription start site region 60576	1522 bp upstream
Tssr60577	transcription start site region 60577	1432 bp upstream
Tssr60578	transcription start site region 60578	1411 bp upstream
Tssr60579	transcription start site region 60579	944 bp upstream