rs217133504 SNP Detail

Summary

• ID
  rs217133504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62249336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT CCTGTGTATT ATTTGTTGTT
  R
  AGAATTTCAA AAACAAAAGC AGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320789365	CHEV_3_62145837	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217133504					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62249336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9330121J05Rik	RIKEN cDNA 9330121J05 gene			1383 bp upstream
Arhgef26	Rho guanine nucleotide exchange factor 26			Intron
				Noncoding-Transcript-Variant
Cpgi13214	CpG island 13214			1504 bp distal
Gm33923	predicted gene, 33923			within coordinates
Rr375082	regulatory region 375082			within coordinates
Rr577511	regulatory region 577511			1293 bp distal
Tssr29353	transcription start site region 29353			1857 bp downstream