rs217037699 SNP Detail

Summary

• ID
  rs217037699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87824842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCAGTT CCAAGGACTC
  TAACACCATT TTCTGATCTC CCTTGGCAGT GCACATAGGT AATACACAAA TCTAAAGCTT
  TACTATATTT TTACTATATT TGTGAAGCTG TGCCACCAAG AACAATTGGC AGGAATCAGT
  TTCTCTTCCC ACCATGTGCA AATCCAGGAT TGAATTCAGG TCAGGCAGGT AGGAGCCTCT
  R
  TTGAGCTATC TGACCAGCCC AAGGAACTTT TTTTATTTAA GATTTAGTTT ATGTATATGT
  ACATAAGTAC ACTGTAGCTG TACAGATGGT TGTGAGCCTT CATGTGGTTG TTGGGAATTT
  AGGACCTCTG CTCGCTGCAG TTGGCTCACT TGCTCTGGTC AACTCTGCTC ACTCAGTCCC
  TGCTCGAGGA TTAGAGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786169	MGP_WTSI_3_87721457	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217037699					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786169	MGP_WTSI_3_87721457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87824842 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	890 bp downstream
Hdgf	heparin binding growth factor	1403 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	1971 bp upstream
Rr367453	regulatory region 367453	1718 bp upstream
Rr579572	regulatory region 579572	335 bp distal
Rr579573	regulatory region 579573	1431 bp proximal
Rr579574	regulatory region 579574	1858 bp proximal
Tssr29856	transcription start site region 29856	1987 bp downstream
Tssr29857	transcription start site region 29857	1963 bp downstream
Tssr29858	transcription start site region 29858	1932 bp downstream
Tssr29859	transcription start site region 29859	1900 bp downstream
Tssr29860	transcription start site region 29860	1752 bp downstream
Tssr29861	transcription start site region 29861	1730 bp downstream
Tssr29862	transcription start site region 29862	1955 bp upstream
Tssr29863	transcription start site region 29863	1980 bp upstream
Tssr29864	transcription start site region 29864	1993 bp upstream