rs216657268 SNP Detail

Summary

• ID
  rs216657268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGACCC CTCTCACCGC
  CGGAGCTCGC GTCCACTCCT TCGCCGACCC GCCCGGCCCG GGAAGGGTGG GGATCCGGGG
  TGGGGGAGGG GCGGGGTCCC GGACCCTAGG CAGACGCCAC TCTTCGGGTC CGGAGTGGGC
  GGCGGGAGGC CCTGATAGCC TATGACCCCG CCCTGGGCTC CATGTGGAGC CCAGTTCTTC
  Y
  CCCTGCAAGT CCAGGCTAGT CTCGCCTATC CCAGGCTAGA CCTTCCTTCC TTCAGGGGCC
  AGGCCGGGCA CCCCTCTCGC AGGCCTTCAT CCCATGGGCT GTACTTGGGC TCCTGCCTCG
  GCCCCAGGGC CCAGGCTAGG ACCGTGGTTC TCGCTCCAGT GGTCCAGTCT AGGTCCCCTT
  CCCCCAAACT CTTCTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363460525	MGP_WTSI_4_138749170	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216657268					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363460525	MGP_WTSI_4_138749170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920566 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			within coordinates
Rr377279	regulatory region 377279			within coordinates
Rr603133	regulatory region 603133			549 bp distal
Rr603134	regulatory region 603134			321 bp distal
Rr603135	regulatory region 603135			159 bp distal
Rr603136	regulatory region 603136			within coordinates
Tssr39900	transcription start site region 39900			314 bp downstream
Tssr39901	transcription start site region 39901			295 bp downstream
Tssr39902	transcription start site region 39902			261 bp downstream
Tssr39903	transcription start site region 39903			3 bp downstream
Tssr39904	transcription start site region 39904			24 bp upstream
Tssr39905	transcription start site region 39905			54 bp upstream
Tssr39906	transcription start site region 39906			831 bp upstream
Tssr44214	transcription start site region 44214			787 bp upstream
Tssr44215	transcription start site region 44215			618 bp upstream
Tssr44216	transcription start site region 44216			597 bp upstream
Tssr44217	transcription start site region 44217			537 bp upstream
Tssr44218	transcription start site region 44218			741 bp downstream