rs216604312 SNP Detail

Summary

• ID
  rs216604312
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53371749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTTTGT TTTGTTTTGG
  TGCAGTTTGC AATACTCTAC CTCCTCGCCT CCTTTCTCCT CCTGGTGTAT TATCCACGAG
  ACGAACCTGG GATGAGCGTT TTGTAATTGC AAGAACTGTG AGACGTCACG ACGGAATAGT
  ACTCAAGATG GACAAAAAGT CCTTTGAGAC GGTGCTGGAT GAAATTCGAA AGGTAATTGA
  S
  CTTGTTCCCT GAAATTCGTC TGAGATAATA ATGGTCGTGA GTTACTTTCT TTGAGGTGTT
  GTGTGTAGTC AGCAGAGGAA CTTGAACTTT CCTGTGTAAC GTAAGAACTT GCATCTTGGT
  CCGTTGCACC GCTTAAATAG AAGATAAACC ACCTCACTGC TAAACTTGGG AAGTCATTGT
  GGTACGGGAA TTACGTTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357982255	MGP_WTSI_3_53268250	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216604312					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357982255	MGP_WTSI_3_53268250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53371749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	281 bp distal
Nhlrc3	NHL repeat containing 3	1070 bp upstream
Proser1	proline and serine rich 1	Intron
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	1519 bp distal
Rr576697	regulatory region 576697	652 bp distal
Rr576698	regulatory region 576698	716 bp distal
Rr576699	regulatory region 576699	within coordinates
Tssr29113	transcription start site region 29113	738 bp downstream
Tssr29114	transcription start site region 29114	647 bp downstream
Tssr29115	transcription start site region 29115	619 bp downstream
Tssr29116	transcription start site region 29116	506 bp downstream
Tssr29117	transcription start site region 29117	422 bp downstream
Tssr33269	transcription start site region 33269	1096 bp upstream
Tssr33270	transcription start site region 33270	1022 bp upstream