rs216546373 SNP Detail

Summary

• ID
  rs216546373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80019570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CCTAACAAAC GCTCTGTGGA
  Y
  TCCCAAGGAG AACCAACCTA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281238	CHEV_7_87514708	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216546373					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80019570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm71928	predicted gene, 71928			1642 bp upstream
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Rr649878	regulatory region 649878			1543 bp proximal
Rr649879	regulatory region 649879			1554 bp proximal
Rr649880	regulatory region 649880			1607 bp proximal
Rr649881	regulatory region 649881			1653 bp proximal
Tssr67437	transcription start site region 67437			497 bp upstream
Tssr73220	transcription start site region 73220			965 bp upstream
Tssr73221	transcription start site region 73221			840 bp upstream
Tssr73222	transcription start site region 73222			961 bp downstream
Tssr73223	transcription start site region 73223			993 bp downstream
Tssr73224	transcription start site region 73224			1021 bp downstream
Tssr73225	transcription start site region 73225			1375 bp downstream
Tssr73226	transcription start site region 73226			1583 bp downstream
Tssr73227	transcription start site region 73227			1659 bp downstream