rs216097204 SNP Detail

Summary

• ID
  rs216097204
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106590246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACACTC CTCCATTGCT
  GGTGGGATTG CAAGCTGATA CTTCCACTCC AGAAATCAGT CTGGTGGCTC CTCAGACAAT
  TGGAAATAGT AATATCTGAG GACCCAGTTA TACCAGTCCC GGGCATATAC CTAAAAGTTG
  CTCCAACATA TAACAAGTAC ACATGCTCCA CTATGTTCAC AGCAGCCTTA TTTCTAATAG
  T
  CAGAAGCTGG AAAGAACCCA GATGCCCCTC AACAGAGGAT GATACATTTA CACGATGGGA
  TACTACTCAG CTATTAAAAA AAAAAGACTT CATGAAATAT GCAGGCAAAT GGTTGGAACT
  AGAAATGATC ATCCTAAGTG AGGTAACCCA GTCCCAAAAG AACACACATG GTATGTGGTC
  ACTGATAAGT GGCTATTAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863829	CHEV_3_106485848	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216097204					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106590246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13667	CpG island 13667	1920 bp proximal
Gm56790	predicted gene, 56790	within coordinates
Rr582860	regulatory region 582860	1541 bp proximal
Rr582861	regulatory region 582861	1958 bp proximal
Tssr34985	transcription start site region 34985	1961 bp downstream