rs216064242 SNP Detail

Summary

• ID
  rs216064242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGCTCC GCCAACTGCA
  CCACCGCCAG GCTAGGATTT TTGTTGTTGT TGTTGTTGTT GTTGTTGTTA AGTGGTACTT
  TCTTTCTCGT GCAGATGCAG AGCCCTTTTT GTCAATATTC ATTTTTGTCT AGTACAAGAT
  ATGAGCAGCT GAACTCGGAG CATAGTCCCT CGGTGCGCTG CAGACAGTGT AGACCACCAT
  K
  GAGAGTCTAG GGGTCCTGGG CTCAATCTGG AGGGAGAAAG CAGGATGAGA GTTAGTAGGG
  CGGGAGTTAG TGGGGTAGGA GTTAGAGGAG AGGGAGTTGT TTGGTGTTTG TTGTTTACCG
  ATGTAGACAA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTACGCGCGC GTGCGTGCGT
  GCGCGTGACC GCTGTGCGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357870	MGP_WTSI_2_115892328	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216064242					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357870	MGP_WTSI_2_115892328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897073 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	633 bp upstream
Meis2	Meis homeobox 2	mRNA-UTR
Rr562985	regulatory region 562985	1964 bp distal
Rr562986	regulatory region 562986	1055 bp distal
Rr562987	regulatory region 562987	447 bp distal
Rr562988	regulatory region 562988	100 bp proximal
Rr562989	regulatory region 562989	886 bp proximal
Rr562990	regulatory region 562990	1387 bp proximal
Rr562991	regulatory region 562991	1513 bp proximal
Tssr19467	transcription start site region 19467	621 bp upstream
Tssr19468	transcription start site region 19468	1341 bp upstream
Tssr25721	transcription start site region 25721	1994 bp upstream
Tssr25722	transcription start site region 25722	1843 bp upstream
Tssr25723	transcription start site region 25723	1821 bp upstream
Tssr25724	transcription start site region 25724	1459 bp upstream
Tssr25725	transcription start site region 25725	1354 bp upstream
Tssr25726	transcription start site region 25726	936 bp upstream
Tssr25727	transcription start site region 25727	903 bp upstream
Tssr25728	transcription start site region 25728	887 bp upstream
Tssr25729	transcription start site region 25729	857 bp upstream
Tssr25730	transcription start site region 25730	796 bp upstream
Tssr25731	transcription start site region 25731	739 bp upstream
Tssr25732	transcription start site region 25732	627 bp upstream
Tssr25733	transcription start site region 25733	529 bp upstream
Tssr25734	transcription start site region 25734	533 bp downstream
Tssr25735	transcription start site region 25735	563 bp downstream
Tssr25736	transcription start site region 25736	763 bp downstream
Tssr25737	transcription start site region 25737	799 bp downstream