rs216031505 SNP Detail

Summary

• ID
  rs216031505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132260851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCAGCT TCTCGGATGG
  AGCCAGCGCC CGTATCCATG CTATCCGACT GCAAAGAGAG TCGTGGACGT GAAAAGAAAA
  GGCACAACAA GGGAGAGAGA ACCTGCGCCC CGCGATGGGC GCTGGGCCGT GCCGCCACCT
  ACCGAGTCCG AGACGAAGCC TCGGGTTTGC AGGACCTTCA TACCCCAGAC ACCGAACCGA
  S
  CCCGAACTGC CAACGCCGAG CCTGCCATTG TCTTCGGCGT TGCTCAGCTC GCGTTGCGGG
  CGTGGCTGCT TCTCTCCTAG CGCGCTAACT GCGAGGGCGG CTGAACTGCC AATCTAGACG
  CCGGGGAGGT GGGACGAGCA CGGAAACCGC GAATCAGGAG GGAGGGGGCG GGGCTTATGA
  TATCTGCAGC GTTTGTTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363296223	MGP_WTSI_4_132089455	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216031505					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363296223	MGP_WTSI_4_132089455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132260851 () rs orientation: forward

Symbol	Name	Function Class
Atp5if1	ATP synthase inhibitory factor subunit 1	Coding-NonSynonymous
Gm12999	predicted gene 12999	within coordinates
Rr398537	regulatory region 398537	within coordinates
Rr398538	regulatory region 398538	1789 bp upstream
Rr601005	regulatory region 601005	873 bp distal
Rr601006	regulatory region 601006	51 bp distal
Rr601007	regulatory region 601007	within coordinates
Rr601008	regulatory region 601008	1520 bp proximal
Tssr39374	transcription start site region 39374	839 bp downstream
Tssr39375	transcription start site region 39375	816 bp downstream
Tssr43684	transcription start site region 43684	344 bp upstream
Tssr43685	transcription start site region 43685	145 bp upstream
Tssr43686	transcription start site region 43686	29 bp downstream
Tssr43687	transcription start site region 43687	1867 bp downstream