rs215889957 SNP Detail

Summary

• ID
  rs215889957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5776387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGGTCT TGGCCAATGC
  ATTCAACTTC CCTTTTTCCT ATTTAGATAC AAGTAAAAGA GTCTGCAATG GCTGTGTTCT
  CACGAAATCC TGAATAAGCA AGCAAAGCAT GATGATATCA GGGACAGGGT CTATACAAAC
  TGACACCATG CCATGTCACG TCTCAGAATA ATGATTTCAA ACATCTCCTA TAAACAAATA
  R
  CAGCACTAAG ATGGATACTA ATTTCCCATG ACCTTTAAAA ATAACAACTT CTCAACTTCT
  GGGGCCTGAT CATCTTCTAC TTGTTTCAGT AAAAATGGGA AGCAGCTTTG TGTAAATATA
  AGGATACACT TGTGAGTCAT GATGGCCAGT CACAAGTGTC CTATCCATCT CTCCATAGTT
  AAATATCTAT AAATCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223077	CHEV_13_5725634	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215889957					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5776387 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1743 bp upstream
Gm57599	predicted gene, 57599	774 bp downstream
Rr387902	regulatory region 387902	1681 bp downstream
Rr474522	regulatory region 474522	1675 bp distal
Tssr121308	transcription start site region 121308	1930 bp upstream