rs215830402 SNP Detail

Summary

• ID
  rs215830402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107689136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGGCCCAG ATACTGAAAC AGTCTGTCCC
  GCAGTCTGCT GTGGGTCAGC TAAGCCTGAG CTGACACTGC TGGCATTTGG CTGCTATGGC
  GTCCGTGCCC AGTGTCTGCT ATGGCTTGGC ATACAGGGAG TGAGCAAGCT CTCCCCTGCA
  S
  TCCCAGAATG CTCAGAATTA AGGGTTCTGG GATGGTATCT GGCTGTCTTG TCTTGTGCCC
  AGTGACAGGG ATGGTATCTG GCTGTCTTGT GCCCAGTGAC AGTGTTCCTG CATCACCTTA
  AGCAATTCAT CTTGCTCCTT GGCAAGCTTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251717	CHEV_4_107504544	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215830402					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107689136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			1035 bp upstream
Rr597082	regulatory region 597082			583 bp distal
Tssr38270	transcription start site region 38270			982 bp downstream
Tssr38271	transcription start site region 38271			972 bp downstream