rs215586505 SNP Detail

Summary

• ID
  rs215586505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90518496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCATG ACTAGCAACA
  TCCTGCATCC AAGGGAGACC TAGAACTGAT TGCAATGGAG GGAAAGCAGG GTCTACAAAT
  TTGCATCTCC TTGTTTTACC CTAAGGCTCT GTCTTCAACT TCCTAGTAGA GCCAGGGTGC
  AGGGACCAAA CTGGGAGGAG GACATCTGGT GCCAGGCCAG GTTTTAGGGT AGGGGGCATG
  Y
  TGGGTTCTCA GTTCCAGTAT ACTGATCTTA CAGAGAGTGG TGATGTCTGG ATCCTTTACC
  AGCTTGGCCT TACAGTGCAA GCAGGATAAG TCTAGGACTT AGCTCAGGAT GATGCTCAGG
  GCCACATAGC CAGACCTCAA GCTGTTTTCA GTAGGAATTG GTATGAATTA CAGATTATTA
  TTTCTTTGGA TGGGAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358835847	MGP_WTSI_3_90415111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215586505					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358835847	MGP_WTSI_3_90415111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90518496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1797 bp proximal
D3Nds7	DNA segment, Chr 3, Nuffield Department of Surgery 3	1425 bp distal
Gm57853	predicted gene, 57853	1995 bp upstream
Rr580415	regulatory region 580415	1578 bp distal
Rr580416	regulatory region 580416	931 bp proximal
Rr580417	regulatory region 580417	1488 bp proximal
Rr580418	regulatory region 580418	1599 bp proximal
S100a5	S100 calcium binding protein A5	Intron
S100a6	S100 calcium binding protein A6 (calcyclin)	1693 bp upstream
Tssr30241	transcription start site region 30241	1794 bp downstream
Tssr30242	transcription start site region 30242	1083 bp upstream
Tssr30243	transcription start site region 30243	1643 bp upstream
Tssr30244	transcription start site region 30244	1680 bp upstream
Tssr30245	transcription start site region 30245	1711 bp upstream
Tssr30246	transcription start site region 30246	1957 bp upstream
Tssr30247	transcription start site region 30247	1987 bp upstream