rs215446846 SNP Detail

Summary

• ID
  rs215446846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155686846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGGGGG GATCGCGGGC
  GGGCTGTGAC TGCAGCAGGC GCCGGAAAGG AAGCGATACC CAATGACAGG TGCAGGCACC
  CTGTCATCTG TCGGCGTGTA CTGATTTTGC CTCCCCAAAC GTCTTATTTT GTGCCGTGGA
  ATGGGCGACT CAGCCAGGTC CCAAGCCTCA ACTTTATTTT AGCCTGCCAG CGGTTTTTCT
  Y
  CAACCGGTAC TTTTCAGGCA TGAAACAGGC TCTTTGCAGC ATTGATGTTT TGAACCCTTG
  AAATGCAAAA TAAAACAAAA AGTAAAACTG CAGACTGGGG GTGGGGGTGG GGGGGCCCTT
  GTTCAGTGTT TGTCTAGTCG CCCGCTCATG GGATGAATGT ACTCTATTAA AAAAAACTGG
  AAAATAATTT TTTGTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363798263	MGP_WTSI_4_154976498	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215446846					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363798263	MGP_WTSI_4_154976498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155686846 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	533 bp upstream
Cpgi15473	CpG island 15473	52 bp distal
Rr398921	regulatory region 398921	924 bp downstream
Rr606514	regulatory region 606514	768 bp distal
Rr606515	regulatory region 606515	544 bp distal
Rr606516	regulatory region 606516	700 bp distal
Rr606517	regulatory region 606517	435 bp distal
Rr606518	regulatory region 606518	within coordinates
Rr606519	regulatory region 606519	420 bp proximal
Rr606520	regulatory region 606520	1445 bp proximal
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40681	transcription start site region 40681	1112 bp downstream
Tssr40682	transcription start site region 40682	976 bp downstream
Tssr40683	transcription start site region 40683	946 bp downstream
Tssr40684	transcription start site region 40684	449 bp downstream
Tssr44954	transcription start site region 44954	1097 bp upstream
Tssr44955	transcription start site region 44955	548 bp upstream