rs215385479 SNP Detail

Summary

• ID
  rs215385479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85352567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTGG
  AAACGGAGTC TCTTCTGGCT CTCCTGGAAC CTGCTATGTA GATTACGGCT CGAATTGTTA
  AATTCCTGCC TCCACTGAGT GCTGGGATTA AAGGCGTGCC CACTGGTTTT AAAACTTTTG
  TGTGGCCAGG TGTAGTAGTG CTCACCTTTA ATCCCAGCAC TTCCACTTGG GAGGCAGAGG
  R
  GGAAAGATCT TTTTGAGTTT GAGACCAGCC TGGTCTACAT AGTGAGTTCC AGGCTAGCTA
  AAACATTAGC CTTATATACA AACAAGGCAA ACAGGGCCTT GTTGGTAGTA GACAAGCATT
  CTACCACAGG ACTAATCTTC CACCTCTAAA TCCATTCATA CTTGCCTACT GTGTGTTGTG
  TTCTGAGAAC TGCCAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369067282	MGP_WTSI_6_85325579	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215385479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369067282	MGP_WTSI_6_85325579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85352567 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Cpgi17642	CpG island 17642	379 bp distal
Rab11fip5	RAB11 family interacting protein 5 (class I)	951 bp upstream
Rr633193	regulatory region 633193	756 bp distal
Rr633194	regulatory region 633194	within coordinates
Rr633195	regulatory region 633195	67 bp distal
Rr633196	regulatory region 633196	1434 bp proximal
Tssr1914	transcription start site region 1914	1140 bp upstream
Tssr61747	transcription start site region 61747	1032 bp upstream
Tssr61748	transcription start site region 61748	1006 bp upstream
Tssr61749	transcription start site region 61749	993 bp upstream
Tssr61750	transcription start site region 61750	921 bp upstream
Tssr61751	transcription start site region 61751	881 bp upstream