rs215351947 SNP Detail

Summary

• ID
  rs215351947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87821617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACGGTGA TAAGAAGGGC
  AGTGCAGAGG GCAGCAGCGA CGAAGAAGGG AAACTGGTGA TCGATGAACC AGCCAAGGAG
  AAGAACGAAA AGGGCACGCT GAAGAGGAGA GCAGGGGATG TGTTGGAGGT AAATGCCAGC
  ATGTGCTCTT TGGCACTTTG AGCCTCTGTG TTACAGCCCA ACTCTGAAGT ATAAATCCAG
  Y
  TCCTGGTCTC TGGGAATCCA TTTGAGAGCG GAGAATAGAA GAGGATAGTG GGGCAGTGAA
  TGTCACCCAG AGACCCTGAG CAGGAGTGGA AGGAAGCACA GGGAAATGAG CTATTAATGT
  TCTGTCTCTA GCCTCACTTT ATGTCCTCTG ATATCTGCTT AGGACTCCCC TAAACGTCCC
  AAGGAGTCAG GAGACCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786129	MGP_WTSI_3_87718232	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215351947					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786129	MGP_WTSI_3_87718232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87821617 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	Intron
Rr375307	regulatory region 375307	1848 bp downstream
Tssr29850	transcription start site region 29850	608 bp upstream
Tssr29851	transcription start site region 29851	746 bp upstream
Tssr29852	transcription start site region 29852	771 bp upstream
Tssr29853	transcription start site region 29853	851 bp upstream
Tssr29854	transcription start site region 29854	966 bp upstream
Tssr29855	transcription start site region 29855	1174 bp upstream
Tssr29856	transcription start site region 29856	1227 bp upstream
Tssr29857	transcription start site region 29857	1250 bp upstream
Tssr29858	transcription start site region 29858	1268 bp upstream
Tssr29859	transcription start site region 29859	1302 bp upstream
Tssr29860	transcription start site region 29860	1440 bp upstream
Tssr29861	transcription start site region 29861	1479 bp upstream