rs215234916 SNP Detail

Summary

• ID
  rs215234916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54538966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGAGCT AGAATCTCCT
  GCCTGGCAGT CTCTCAAACC CCACTCCCAT CCTATCAAAT TTAAACAAAC ACATGGGCAC
  AAGTCTCTAT TTTTAAAAAA CAAAACAAAA CTTTTATTTG AGAAAAATAT ATATAAAATT
  GCAAACCAAA ACGCACACAG GCAAGAGTTA TTAATCCAAA GAATAGAATG TTTGGTTTAG
  K
  TTTTTTTGCT CTGGTAATTT AGAATTTACT TTTGAAAAAG CAGTTGAGGG ACATTAGCCA
  GGCATGGTAA TTCACACCTA TAGTCCCACT CTAAAGGTAA CAGAAACAAG ATCAAAGCCA
  GCTCTGGGCC ACACCGGGAG GGGGAGAACA GTATTAAGTG CTCTATTTCC ATTTTGAACA
  TTTTAACACA AATTAATGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772262	CHEV_3_54435467	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215234916					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54538966 () rs orientation: forward

Symbol	Name	Function Class
B020017C02Rik	RIKEN cDNA B020017C02 gene	1336 bp downstream
Cpgi13170	CpG island 13170	1583 bp proximal
Rr576819	regulatory region 576819	994 bp distal