rs214884210 SNP Detail

Summary

• ID
  rs214884210
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89297764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTGTC TCCACCTTCC
  TCCCCCACCC TCCTTTTTAG CCCTGGGCCA AAACAGGCAC AAGCCCCAAG GCCTGGTGGC
  AGGGCTGTCT TAACTCTCAG GAAGGTCACA GAGCCAAGCA GGCTGGAGGC AGGAAGCCCT
  GAAGCAGGCC CAGAGGCGTC TATCAGAGGG CAGTGCCCTG TTTGGAGCCC ATCTACTCCC
  M
  GGCTTAGGTC TTTGGCCTTG GGCCAAAAGA ACTGGGTCTC TCTCTCTCTC AGCTATCAAA
  AGGAGAGCCT TGCCTCCTCC ACCTGAGCAG TCTGCTGGCC CAGTAAGTTC TGACCCCCAA
  ATGGCCACTC TTGGGCTGGG CCTCAGGTAC CAACACCAAT GCCATTCAGG ATCTCATTCA
  TCTTAGCCTT GGCTGGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811605	MGP_WTSI_3_89194379	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214884210					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811605	MGP_WTSI_3_89194379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89297764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13427	CpG island 13427	1565 bp proximal
Gm15417	predicted gene 15417	1407 bp upstream
Rr375331	regulatory region 375331	109 bp upstream
Rr580068	regulatory region 580068	118 bp distal
Rr580069	regulatory region 580069	883 bp proximal
Rr580070	regulatory region 580070	1384 bp proximal
Rr580071	regulatory region 580071	1602 bp proximal
Rr580072	regulatory region 580072	1714 bp proximal
Tssr30096	transcription start site region 30096	1123 bp downstream
Tssr30097	transcription start site region 30097	1367 bp upstream
Tssr30098	transcription start site region 30098	1718 bp upstream
Tssr30099	transcription start site region 30099	1780 bp upstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron