rs214505429 SNP Detail

Summary

• ID
  rs214505429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116455598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTAGCA CACTGCACAG
  TGCATAAAGT TTTCTGCGAG TAACGACTGT CTAAAAGGCA CATTTTTAGC CTCAGTCCGC
  CTGCCAGAAT CTGTCTCCGA TCCTCACGCC ATGACCAATT CTAAAGACTT ATTTTGAGGC
  ACAAGGTGAA GATTTCTCTA ACGGAGAGGG CCCCAGGGAA GGTCAGGCTT CCGACGCCGG
  R
  AGAGGGGACG AGCCCACTCC CCGACAAGGT AGCCGAACAG CTCCAAGCCG CTGCTCCGGC
  TCCCGGCGAC CGCGATGGGA CAACGCACGT ACCCTGGCCC AGCGGGCCGC GGCGGCGGCC
  ACCCGCCACA GCATACGGAG CGCAAGGCTG CCCAGCCTCC CCGCGCGCCG CGCTGGGCCT
  GGCGAGGCTG CGGAGGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359358717	MGP_WTSI_3_116364867	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214505429					SNP	G	G	G	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359358717	MGP_WTSI_3_116364867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116455598 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	1783 bp upstream
Cpgi13738	CpG island 13738	within coordinates
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	551 bp upstream
Rr583758	regulatory region 583758	within coordinates
Rr583759	regulatory region 583759	718 bp proximal
Tssr31364	transcription start site region 31364	174 bp downstream
Tssr35324	transcription start site region 35324	143 bp downstream
Tssr35325	transcription start site region 35325	321 bp downstream
Tssr35326	transcription start site region 35326	588 bp downstream
Tssr35327	transcription start site region 35327	605 bp downstream
Tssr35328	transcription start site region 35328	622 bp downstream
Tssr35329	transcription start site region 35329	641 bp downstream
Tssr35330	transcription start site region 35330	694 bp downstream