rs214415064 SNP Detail

Summary

• ID
  rs214415064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138122432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCTGGGC CGGGTCTAGG GCCCCGAGTC
  CTAGCCCTGC GCTCTCAGCG CGCCTGGCCC GCCCGCTCCC TGGAGCCGGC TTTCCAGCGG
  CGGGGCTGCG CTGGTGGCGG AGGTGCCGGG GCACCCCGCA GGCTGCACGT CCTCAGCTCC
  Y
  GGGCCAGGCT GAGCACCTCG GGCCGTTCGC GCTGCAGGGC TCCTTCCTCG CTATCCCGGG
  TGtcctcctc ctccgcatcc tcctcctcat cctcctcctG GATGCTGCTG AGCCGCGGAG
  CTCCGCGACC GCGCTCGCCC GGCGGAGGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373122	CHEV_4_137951036	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214415064					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138122432 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	77 bp upstream
Cpgi15151	CpG island 15151	within coordinates
Fam43b	family with sequence similarity 43, member B	Coding-NonSynonymous
Rr602906	regulatory region 602906	within coordinates
Rr602907	regulatory region 602907	265 bp proximal
Rr602908	regulatory region 602908	292 bp proximal
Rr602909	regulatory region 602909	1397 bp proximal
Tssr44164	transcription start site region 44164	1266 bp downstream
Tssr44165	transcription start site region 44165	1317 bp downstream