rs214292510 SNP Detail

Summary

• ID
  rs214292510
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCTGAG GCTCATAATC
  ACAGTGCCAA CTCTTGTGAA ACCAACCTTC ATTTTTATCT TTCTTTTGCT GCTATGACAT
  GATTTGCATA TCTCTGAAGA TAAATGCCTT TTACAATGTG GCAGAAGCAC TGTTTAAGTG
  AAAACTGTTA ATAAAAATGA TTAAGCTTAC CATAATTGTT TCAAGTGCAT GCTGTACATT
  S
  TTCATAATGT AAGAAACGCC GCTCCTAAAT TTCTGTAAGA GGGGAGGTCA TTAGAAGACT
  CTTAGCTGTC ACACAGGCAC CCAATGATGA GGGGTTCAGC TCTGCAACTG AACATTCAGA
  ATAACAGTAG TACCACACAG AGGAAATGTC ACAGTCACGG GGCTTAGTAC TCTTGTGGAA
  TACAGAAACA CAAAGATACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321003279	CHEV_3_142282175	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214292510					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324972 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1452 bp upstream
Gbp2b	guanylate binding protein 2b	32 bp downstream
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	671 bp upstream
Rr586457	regulatory region 586457	235 bp distal
Rr586458	regulatory region 586458	901 bp proximal
Rr586459	regulatory region 586459	1402 bp proximal
Tssr32216	transcription start site region 32216	1026 bp downstream
Tssr32217	transcription start site region 32217	988 bp downstream
Tssr32218	transcription start site region 32218	934 bp downstream
Tssr32219	transcription start site region 32219	897 bp downstream
Tssr32220	transcription start site region 32220	883 bp downstream
Tssr32221	transcription start site region 32221	865 bp downstream
Tssr32222	transcription start site region 32222	809 bp downstream
Tssr32223	transcription start site region 32223	752 bp downstream
Tssr32224	transcription start site region 32224	698 bp downstream
Tssr32225	transcription start site region 32225	360 bp downstream
Tssr32226	transcription start site region 32226	320 bp downstream
Tssr32227	transcription start site region 32227	1385 bp upstream
Tssr32228	transcription start site region 32228	1436 bp upstream
Tssr32229	transcription start site region 32229	1475 bp upstream
Tssr32230	transcription start site region 32230	1511 bp upstream
Tssr32231	transcription start site region 32231	1528 bp upstream
Tssr35947	transcription start site region 35947	30 bp upstream