rs214249740 SNP Detail

Summary

• ID
  rs214249740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122038954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGGGAA AATTAAAGTT
  GTACTCTCTG GTTTCATACA GCACCAGCAA ATAGGTAAAT CAACACGCTG GAAGAAGAAT
  GATCAGTTTG GGGGAAAGAC TCTTGGGCAA AGCAAAGCAA AAGGAAAAAA TAAAAATAAA
  TTTAAAAAAC AGAGCGGGGC GCGGGCAATG AGACACTCGC GCCATCGCAT CAGCTCCTTA
  R
  ACACAGAAGC AGGCACGCTC TCAAGGCCTG GGAGGATGGA CCTCCGGCGG TCCTCTCGAA
  GAGGGCGTGT CCAGGGCCGC AGCGCGGGCG GCCATTGGCT GAGCGGCGCT CCCGGGCGCA
  CCGTCAACTC TCACGAGGCG CTGGCGGCGT AGGCCGCGCG CCGCGCTCTG GCCGGCAGGG
  GGCGCACGTC CGCGCGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359496023	MGP_WTSI_3_121948223	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	A	G	G	A	G	G	A	G	A	G	G	G	G	G	G	A	G	G	A	G	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214249740					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	A	G	G	A	G	G	A	G	A	G	G	G	G	G	G	A	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496023	MGP_WTSI_3_121948223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122038954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit	252 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1495 bp downstream
Rr375675	regulatory region 375675	828 bp downstream
Rr397979	regulatory region 397979	within coordinates
Rr584262	regulatory region 584262	1453 bp distal
Rr584264	regulatory region 584264	1036 bp distal
Rr584265	regulatory region 584265	within coordinates
Rr584266	regulatory region 584266	35 bp proximal
Rr584267	regulatory region 584267	168 bp proximal
Rr584268	regulatory region 584268	917 bp proximal
Tssr1039	transcription start site region 1039	438 bp upstream
Tssr31478	transcription start site region 31478	171 bp upstream
Tssr31479	transcription start site region 31479	258 bp upstream
Tssr31480	transcription start site region 31480	276 bp upstream
Tssr31481	transcription start site region 31481	305 bp upstream
Tssr31482	transcription start site region 31482	320 bp upstream
Tssr31483	transcription start site region 31483	471 bp upstream
Tssr31484	transcription start site region 31484	605 bp upstream
Tssr35443	transcription start site region 35443	76 bp upstream
Tssr35444	transcription start site region 35444	within coordinates