rs213911489 SNP Detail

Summary

• ID
  rs213911489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189494651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGACTCTT GCACAGGGAC
  ACACACACAC ACACACACAC ACACACACAC CCTGCGTCAT CTGCATTCTT GTTCAAAGTG
  GTGAATGGTT CCTGCACCAT GAAGGAAAAG CAGTAGTTTG GGGATGACCA TTGACTGCCC
  CACTTAATGT TCATAGCAAA AACGTGCTCT GAACATTATT AGAATTCTTT ATAATGGGCA
  R
  GCTTGGTGGA AACTTGATGG TTAACAGGCT TGAGGGTGGT GGTGTGTGCA GTGCTCACGT
  GAAGGTCAAT GACCAGTGTT GTTTCTTGGA GCCTTTTGCC TGGGCTTTTT GAGGCAGTCT
  CTCACTAGCC TCGAACTCAG TGAGTAGGCT GACTGCTCAG TGAGCTCCAA GGATTCATCT
  GTTTTCTGTG TCCCCAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320191516	CHEV_1_191586333	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213911489					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189494651 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	76 bp downstream
Rr425841	regulatory region 425841	164 bp distal
Rr425842	regulatory region 425842	1825 bp proximal