rs213887090 SNP Detail

Summary

• ID
  rs213887090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116325875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTCCCAA GTGGCTGCTT GTGCACTGTC
  AGGTCTTGCC TTTCTTTCTG CCTCATtgtg tatgtgtacc tgtgtgtctc tgttgtactt
  gtgtgtatac ctgtatgtgt acacctgtgt gtatatgtgt acctgtgtgt gtgtatgtAC
  Y
  tgtgtgtgtg tttgtgtgtg tgtaccaggg tactcttgtg gaggtaagag gatagttttc
  ataccatgtc agtcctgagg accagactca gtcttgtcaT CCATTCATAA TTGTATGACA
  TAAAGGGTTA GGTATAACAC TATTCAGGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321917486	CHEV_6_116298932	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213887090					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116325875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Marchf8	membrane associated ring-CH-type finger 8			Intron
				mRNA-UTR
Rr637191	regulatory region 637191			659 bp distal
Rr637192	regulatory region 637192			551 bp proximal
Tssr58369	transcription start site region 58369			1988 bp upstream